Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs10492070 chr12:5108943 A/G 3.08E-5 178 25.4 24.23 14.4 KM Plot
PCPG rs10493183 chr1:56333648 T/C 2.01E-7 174 25.7 25.67 13.27 KM Plot
PCPG rs10493185 chr1:56321789 A/G 2.13E-7 173 25.87 20.02 15.6 KM Plot
PCPG rs10493187 chr1:56320969 C/T 0.000119 178 25.87 17.4 22.52 KM Plot
PCPG rs10502873 chr18:44141951 C/T 1.22E-7 176 25.08 26.57 19.87 KM Plot
PCPG rs10508205 chr10:1081747 C/G 1.28E-5 176 24.62 28.58 13.38 KM Plot
PCPG rs10509292 chr10:69726087 A/C 0 178 25.87 18.2 2.28 KM Plot
PCPG rs10509293 chr10:69805786 G/A 0 177 25.87 18.2 2.28 KM Plot
PCPG rs10514996 chr17:50285434 G/A 3.59E-5 177 25.53 28.3 14.43 KM Plot
PCPG rs10514998 chr17:50299809 A/G 5.9E-5 178 25.4 28.38 14.47 KM Plot
PCPG rs10515923 chr2:118579145 G/A 1.95E-5 176 25.28 28.45 11.65 KM Plot
PCPG rs10520130 chr15:39753842 C/T 0.000433 177 24.85 27.27 26.33 KM Plot
PCPG rs1056123 chr2:24338428 T/G 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs10607038 chr6:123124297 AGTG/A 3.53E-6 177 8.67 27.27 24.85 KM Plot
PCPG rs1060855 chr4:110971890 G/C 0 176 26.88 18.2 2.93 KM Plot